! Started logfile: /scr/pima/rdv96_uvs/J1606+5405_S_uvs.log on Sat Dec 21 00:24:39 2013
obs /scr/pima/rdv96_uvs/J1606+5405_S_uva.fits
! Reading UV FITS file: /scr/pima/rdv96_uvs/J1606+5405_S_uva.fits
! AN table 1: 44 integrations on 45 of 45 possible baselines.
! Apparent sampling: 0.722222 visibilities/baseline/integration-bin.
! Found source: J1606+5405
! 
! There are 4 IFs, and a total of 4 channels:
! 
!  IF  Channel    Frequency  Freq offset  Number of   Overall IF
!       origin    at origin  per channel   channels    bandwidth
!  ------------------------------------------------------------- (Hz)
!  01        1  2.23299e+09        8e+06          1        8e+06
!  02        2  2.26299e+09        8e+06          1        8e+06
!  03        3  2.35299e+09        8e+06          1        8e+06
!  04        4  2.37299e+09        8e+06          1        8e+06
! 
! Polarization(s): RR
! 
! Read 0 lines of history.
! 
! Reading 5720 visibilities.
select RR
! Selecting polarization: RR,  channels: 1..4
! Reading IF 1 channels: 1..1
! Reading IF 2 channels: 2..2
! Reading IF 3 channels: 3..3
! Reading IF 4 channels: 4..4
print "field_size =",field_size
! field_size = 1024 
print "field_cell =",field_cell
! field_cell = 0.4 
print "taper_size =",taper_size
! taper_size = 20 
![@/home/lpetrov/bin/rdv_muppet /scr/pima/rdv96_uvs/J1606+5405_S]
integer clean_niter
clean_niter = 100
float clean_gain
clean_gain = 0.03
float dynam
dynam = 6.0
float soltime1
soltime1 = 800000
float soltime2
soltime2 = 15
float soltime3
soltime3 = 1
float thresh
thresh = 0.5
float win_mult
win_mult = 1.8
float old_peak
float new_peak
float flux_cutoff
selfant "",false
! 1:BR       self-cal  status=correctable  weight=1
! 1:FD       self-cal  status=correctable  weight=1
! 1:HN       self-cal  status=correctable  weight=1
! 1:KP       self-cal  status=correctable  weight=1
! 1:LA       self-cal  status=correctable  weight=1
! 1:MK       self-cal  status=correctable  weight=1
! 1:NL       self-cal  status=correctable  weight=1
! 1:OV       self-cal  status=correctable  weight=1
! 1:PT       self-cal  status=correctable  weight=1
! 1:SC       self-cal  status=correctable  weight=1
system "rm /tmp/ff.ff"
mapsize field_size, field_cell
! Map grid = 1024x1024 pixels with 0.400x0.400 milli-arcsec cellsize.
startmod
! Applying default point source starting model.
! Performing phase self-cal
! Adding 1 model components to the UV plane model.
! The established model now contains 1 components and 1 Jy
! 
! Correcting IF 1.
!  A total of 22 telescope corrections were flagged in sub-array 1.
! 
! Correcting IF 2.
!  A total of 22 telescope corrections were flagged in sub-array 1.
! 
! Correcting IF 3.
!  A total of 22 telescope corrections were flagged in sub-array 1.
! 
! Correcting IF 4.
!  A total of 22 telescope corrections were flagged in sub-array 1.
! 
! Fit before self-cal, rms=1.004432Jy  sigma=1.145237
! Fit after  self-cal, rms=0.932914Jy  sigma=1.039598
! clrmod: Cleared the established, tentative and continuum models.
! Redundant starting model cleared.
print "=== Flag out IVS stations"
! === Flag out IVS stations 
integer lun
string  cfg_file
lun = outfile ( "/tmp/ff.ff" ) 
do i=1,nsub
  do j=1,ntel(i)
    fprintf lun, "%s\n", telname(j,i)
    end do
  end do
close ( lun )
system "/home/lpetrov/bin/dimap_flag_process.csh /tmp/ff.ff"
![@/tmp/ff.ff \]
![Exited script file: /tmp/ff.ff]
uvw 2,-1
! Uniform weighting binwidth: 2 (pixels).
! Gridding weights will be scaled by errors raised to the power -1.
! Radial weighting is not currently selected.
flux_cutoff = imstat(rms) * dynam
! Inverting map and beam 
! Estimated beam: bmin=3.851 mas, bmaj=6.293 mas, bpa=-72.21 degrees
! Estimated noise=17.9858 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! Added new window around map position (0, 0).
! clean: niter=100  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.0609557 Jy
! Component: 100  -  total flux cleaned = 0.0825074 Jy
! Total flux subtracted in 100 components = 0.0825074 Jy
! Clean residual min=-0.005902 max=0.012163 Jy/beam
! Clean residual mean=-0.000067 rms=0.001777 Jy/beam
! Combined flux in latest and established models = 0.0825074 Jy
! Performing phase self-cal
! Adding 20 model components to the UV plane model.
! The established model now contains 20 components and 0.0825074 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.053993Jy  sigma=0.058809
! Fit after  self-cal, rms=0.053438Jy  sigma=0.058360
! Inverting map 
! Added new window around map position (5.6, -2.8).
! clean: niter=100  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.0110976 Jy
! Component: 100  -  total flux cleaned = 0.0165817 Jy
! Total flux subtracted in 100 components = 0.0165817 Jy
! Clean residual min=-0.004787 max=0.007208 Jy/beam
! Clean residual mean=-0.000032 rms=0.001241 Jy/beam
! Combined flux in latest and established models = 0.0990892 Jy
! Performing phase self-cal
! Adding 8 model components to the UV plane model.
! The established model now contains 28 components and 0.0990892 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.051563Jy  sigma=0.054808
! Fit after  self-cal, rms=0.051757Jy  sigma=0.054720
! Inverting map 
print "=== Finished uniform weighting clean ==="
! === Finished uniform weighting clean === 
uvw 0,-1
! Uniform weighting is not currently selected.
! Gridding weights will be scaled by errors raised to the power -1.
! Radial weighting is not currently selected.
win_mult = win_mult * 1.6
clean_niter = clean_niter * 2
dynam = dynam - 0.5
flux_cutoff = imstat(rms) * dynam
! Inverting map and beam 
! Estimated beam: bmin=5.204 mas, bmaj=8.62 mas, bpa=-72.31 degrees
! Estimated noise=9.06441 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! Added new window around map position (-8.8, 4.4).
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.00604661 Jy
! Component: 100  -  total flux cleaned = 0.0093422 Jy
! Component: 150  -  total flux cleaned = 0.0108287 Jy
! Component: 200  -  total flux cleaned = 0.0114524 Jy
! Total flux subtracted in 200 components = 0.0114524 Jy
! Clean residual min=-0.003149 max=0.003265 Jy/beam
! Clean residual mean=-0.000009 rms=0.000738 Jy/beam
! Combined flux in latest and established models = 0.110542 Jy
! Performing phase self-cal
! Adding 27 model components to the UV plane model.
! The established model now contains 50 components and 0.110542 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.050915Jy  sigma=0.053837
! Fit after  self-cal, rms=0.050937Jy  sigma=0.053797
! Inverting map 
print "=== Finished natural weighting clean for VLBI sites ==="
! === Finished natural weighting clean for VLBI sites === 
gscale true
! Performing overall amplitude self-cal
! 
! Correcting IF 1.
!  Telescope amplitude corrections in sub-array 1:
!   BR        1.00     FD        0.96     HN        1.03     KP        0.99     
!   LA        1.17     MK        0.82     NL        0.96     OV        1.02     
!   PT        1.01     SC        0.99     
! 
! 
! Correcting IF 2.
!  Telescope amplitude corrections in sub-array 1:
!   BR        1.07     FD        1.02     HN        1.07     KP        0.99     
!   LA        1.04     MK        0.98     NL        1.02     OV        1.05     
!   PT        1.05     SC        1.04     
! 
! 
! Correcting IF 3.
!  Telescope amplitude corrections in sub-array 1:
!   BR        1.10     FD        1.08     HN        0.99     KP        0.91     
!   LA        0.97     MK        1.08     NL        1.12     OV        1.07     
!   PT        1.07     SC        0.97     
! 
! 
! Correcting IF 4.
!  Telescope amplitude corrections in sub-array 1:
!   BR        0.98     FD        1.13     HN        0.92     KP        0.83     
!   LA        0.83     MK        1.13     NL        1.00     OV        0.91     
!   PT        0.97     SC        1.00     
! 
! 
! Fit before self-cal, rms=0.050937Jy  sigma=0.053797
! Fit after  self-cal, rms=0.050263Jy  sigma=0.051948
dynam = dynam - 0.5
flux_cutoff = imstat(rms) * dynam
! Inverting map and beam 
! Estimated beam: bmin=5.206 mas, bmaj=8.634 mas, bpa=-72.3 degrees
! Estimated noise=9.10104 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.00024716 Jy
! Component: 100  -  total flux cleaned = 0.000409116 Jy
! Component: 150  -  total flux cleaned = 0.000455562 Jy
! Component: 200  -  total flux cleaned = 0.000499759 Jy
! Total flux subtracted in 200 components = 0.000499759 Jy
! Clean residual min=-0.001932 max=0.001759 Jy/beam
! Clean residual mean=-0.000030 rms=0.000489 Jy/beam
! Combined flux in latest and established models = 0.111041 Jy
! Performing phase self-cal
! Adding 23 model components to the UV plane model.
! The established model now contains 69 components and 0.111041 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.050064Jy  sigma=0.051878
! Fit after  self-cal, rms=0.050120Jy  sigma=0.051851
! Inverting map 
selfcal true, true, soltime1
! Performing amp+phase self-cal over 800000 minute time intervals
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.050120Jy  sigma=0.051851
! Fit after  self-cal, rms=0.050030Jy  sigma=0.051848
dynam = dynam - 0.75
clean clean_niter,clean_gain
! Inverting map and beam 
! Estimated beam: bmin=5.197 mas, bmaj=8.622 mas, bpa=-72.24 degrees
! Estimated noise=9.09132 mJy/beam.
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = -7.41818e-05 Jy
! Component: 100  -  total flux cleaned = -7.36289e-05 Jy
! Component: 150  -  total flux cleaned = -7.48857e-05 Jy
! Component: 200  -  total flux cleaned = -7.54727e-05 Jy
! Total flux subtracted in 200 components = -7.54727e-05 Jy
! Clean residual min=-0.001853 max=0.001750 Jy/beam
! Clean residual mean=-0.000032 rms=0.000477 Jy/beam
! Combined flux in latest and established models = 0.110966 Jy
selfcal
! Performing phase self-cal
! Adding 21 model components to the UV plane model.
! The established model now contains 76 components and 0.110966 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.049912Jy  sigma=0.051817
! Fit after  self-cal, rms=0.049914Jy  sigma=0.051815
flux_cutoff = imstat(rms) * dynam
! Inverting map 
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 3.65259e-05 Jy
! Component: 100  -  total flux cleaned = 3.57552e-05 Jy
! Component: 150  -  total flux cleaned = 3.47831e-05 Jy
! Component: 200  -  total flux cleaned = 3.38532e-05 Jy
! Total flux subtracted in 200 components = 3.38532e-05 Jy
! Clean residual min=-0.001803 max=0.001727 Jy/beam
! Clean residual mean=-0.000032 rms=0.000469 Jy/beam
! Combined flux in latest and established models = 0.111 Jy
! Performing phase self-cal
! Adding 22 model components to the UV plane model.
! The established model now contains 79 components and 0.111 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.049837Jy  sigma=0.051795
! Fit after  self-cal, rms=0.049836Jy  sigma=0.051794
! Inverting map 
selfcal true, true, soltime2
! Performing amp+phase self-cal over 15 minute time intervals
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.049836Jy  sigma=0.051794
! Fit after  self-cal, rms=0.049452Jy  sigma=0.051661
clean clean_niter,clean_gain
! Inverting map and beam 
! Estimated beam: bmin=5.203 mas, bmaj=8.536 mas, bpa=-73.03 degrees
! Estimated noise=9.0336 mJy/beam.
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.000266988 Jy
! Component: 100  -  total flux cleaned = 0.000389736 Jy
! Component: 150  -  total flux cleaned = 0.000389964 Jy
! Component: 200  -  total flux cleaned = 0.000415415 Jy
! Total flux subtracted in 200 components = 0.000415415 Jy
! Clean residual min=-0.001490 max=0.001557 Jy/beam
! Clean residual mean=-0.000011 rms=0.000417 Jy/beam
! Combined flux in latest and established models = 0.111415 Jy
selfcal
! Performing phase self-cal
! Adding 16 model components to the UV plane model.
! The established model now contains 89 components and 0.111415 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.049378Jy  sigma=0.051642
! Fit after  self-cal, rms=0.049395Jy  sigma=0.051638
flux_cutoff = imstat(rms) * dynam
! Inverting map 
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 7.3449e-05 Jy
! Component: 100  -  total flux cleaned = 7.34848e-05 Jy
! Component: 150  -  total flux cleaned = 7.32522e-05 Jy
! Component: 200  -  total flux cleaned = 9.32724e-05 Jy
! Total flux subtracted in 200 components = 9.32724e-05 Jy
! Clean residual min=-0.001498 max=0.001551 Jy/beam
! Clean residual mean=-0.000011 rms=0.000412 Jy/beam
! Combined flux in latest and established models = 0.111508 Jy
! Performing phase self-cal
! Adding 19 model components to the UV plane model.
! The established model now contains 92 components and 0.111508 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.049362Jy  sigma=0.051629
! Fit after  self-cal, rms=0.049362Jy  sigma=0.051628
! Inverting map 
uvtaper 0.3,taper_size
! Gaussian taper: value 0.3 at UV radius = 20 mega-wavelengths.
win_mult = win_mult * 1.2
selfcal true, true, soltime2
! Performing amp+phase self-cal over 15 minute time intervals
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.049362Jy  sigma=0.051628
! Fit after  self-cal, rms=0.049119Jy  sigma=0.051610
clean clean_niter,clean_gain
! Inverting map and beam 
! Estimated beam: bmin=8.679 mas, bmaj=14.62 mas, bpa=-72.11 degrees
! Estimated noise=8.94066 mJy/beam.
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.000218714 Jy
! Component: 100  -  total flux cleaned = 0.000171755 Jy
! Component: 150  -  total flux cleaned = 0.000130876 Jy
! Component: 200  -  total flux cleaned = 0.000118041 Jy
! Total flux subtracted in 200 components = 0.000118041 Jy
! Clean residual min=-0.001504 max=0.001454 Jy/beam
! Clean residual mean=-0.000017 rms=0.000453 Jy/beam
! Combined flux in latest and established models = 0.111626 Jy
selfcal
! Performing phase self-cal
! Adding 22 model components to the UV plane model.
! The established model now contains 113 components and 0.111626 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.049111Jy  sigma=0.051604
! Fit after  self-cal, rms=0.049112Jy  sigma=0.051603
flux_cutoff = imstat(rms) * dynam
! Inverting map 
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = -2.73798e-05 Jy
! Component: 100  -  total flux cleaned = -2.71747e-05 Jy
! Component: 150  -  total flux cleaned = -3.83074e-05 Jy
! Component: 200  -  total flux cleaned = -3.81827e-05 Jy
! Total flux subtracted in 200 components = -3.81827e-05 Jy
! Clean residual min=-0.001492 max=0.001450 Jy/beam
! Clean residual mean=-0.000018 rms=0.000450 Jy/beam
! Combined flux in latest and established models = 0.111588 Jy
! Performing phase self-cal
! Adding 21 model components to the UV plane model.
! The established model now contains 130 components and 0.111588 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.049105Jy  sigma=0.051600
! Fit after  self-cal, rms=0.049102Jy  sigma=0.051600
! Inverting map 
uvtaper 0,0
! No UV-taper is currently set.
win_mult = win_mult / 1.2
print "=== Finished amplitude self-cal for VLBA stations ==="
! === Finished amplitude self-cal for VLBA stations === 
unflag *
! Unflagging all baselines in the currently selected channels.
uncalib false, false, true
! uncal: All telescope correction flags have been un-done.
integer lun
lun = outfile ( "/tmp/ff.ff" )
do i=1,nsub
  do j=1,ntel(i)
    fprintf lun, "%s\n", telname(j,i)
    end do
  end do
close ( lun )
system "/home/lpetrov/bin/dimap_selfant_process.csh /tmp/ff.ff"
![@/tmp/ff.ff]
1:BR
! Syntax error in line:
! 1:BR
! ^
! Found constant: 1.000 
! Where a command or assignment expression was expected.
![Exited script file: /tmp/ff.ff]
![Exited script file: /home/lpetrov/bin/rdv_muppet]
! 
wmap "/scr/pima/rdv96_uvs/J1606+5405_S\_map.fits"
! Inverting map and beam 
! Estimated beam: bmin=5.194 mas, bmaj=7.843 mas, bpa=-76.19 degrees
! Estimated noise=9.00564 mJy/beam.
! restore: Substituting estimate of restoring beam from last 'invert'.
! Restoring with beam: 5.194 x 7.843 at -76.19 degrees (North through East)
! Clean map  min=-0.00214  max=0.062337 Jy/beam
! Writing clean map to FITS file: /scr/pima/rdv96_uvs/J1606+5405_S_map.fits
float peak_flux
peak_flux = peak(flux,max)
invert
! Inverting map 
float image_peak
image_peak = int(10000*peak_flux)/10000
float image_rms
image_rms  = int(100000*imstat(rms))/100000
print "========================================="
! ========================================= 
print "The image peak= ", image_peak, " rms= ", image_rms, " Jy"
! The image peak=  0.0623  rms=  0.00041  Jy 
quit
! Quitting program
! Log file /scr/pima/rdv96_uvs/J1606+5405_S_uvs.log closed on Sat Dec 21 00:24:42 2013