! Started logfile: /scr/pima/rdv96_uvs/J0538-4405_S_uvs.log on Sat Dec 21 00:22:37 2013
obs /scr/pima/rdv96_uvs/J0538-4405_S_uva.fits
! Reading UV FITS file: /scr/pima/rdv96_uvs/J0538-4405_S_uva.fits
! AN table 1: 2 integrations on 15 of 15 possible baselines.
! AN table 2: 2 integrations on 21 of 21 possible baselines.
! AN table 3: 4 integrations on 15 of 15 possible baselines.
! Apparent sampling: 1 visibilities/baseline/integration-bin.
! Found source: J0538-4405
! 
! There are 4 IFs, and a total of 4 channels:
! 
!  IF  Channel    Frequency  Freq offset  Number of   Overall IF
!       origin    at origin  per channel   channels    bandwidth
!  ------------------------------------------------------------- (Hz)
!  01        1  2.23299e+09        8e+06          1        8e+06
!  02        2  2.26299e+09        8e+06          1        8e+06
!  03        3  2.35299e+09        8e+06          1        8e+06
!  04        4  2.37299e+09        8e+06          1        8e+06
! 
! Polarization(s): RR
! 
! Read 0 lines of history.
! 
! Reading 528 visibilities.
select RR
! Selecting polarization: RR,  channels: 1..4
! Reading IF 1 channels: 1..1
! Reading IF 2 channels: 2..2
! Reading IF 3 channels: 3..3
! Reading IF 4 channels: 4..4
print "field_size =",field_size
! field_size = 1024 
print "field_cell =",field_cell
! field_cell = 0.4 
print "taper_size =",taper_size
! taper_size = 20 
![@/home/lpetrov/bin/rdv_muppet /scr/pima/rdv96_uvs/J0538-4405_S]
integer clean_niter
clean_niter = 100
float clean_gain
clean_gain = 0.03
float dynam
dynam = 6.0
float soltime1
soltime1 = 800000
float soltime2
soltime2 = 15
float soltime3
soltime3 = 1
float thresh
thresh = 0.5
float win_mult
win_mult = 1.8
float old_peak
float new_peak
float flux_cutoff
selfant "",false
! 1:FD       self-cal  status=correctable  weight=1
! 1:KP       self-cal  status=correctable  weight=1
! 1:LA       self-cal  status=correctable  weight=1
! 1:OV       self-cal  status=correctable  weight=1
! 1:PT       self-cal  status=correctable  weight=1
! 1:SC       self-cal  status=correctable  weight=1
! 2:FD       self-cal  status=correctable  weight=1
! 2:KP       self-cal  status=correctable  weight=1
! 2:LA       self-cal  status=correctable  weight=1
! 2:MK       self-cal  status=correctable  weight=1
! 2:OV       self-cal  status=correctable  weight=1
! 2:PT       self-cal  status=correctable  weight=1
! 2:SC       self-cal  status=correctable  weight=1
! 3:FD       self-cal  status=correctable  weight=1
! 3:KP       self-cal  status=correctable  weight=1
! 3:LA       self-cal  status=correctable  weight=1
! 3:MK       self-cal  status=correctable  weight=1
! 3:OV       self-cal  status=correctable  weight=1
! 3:PT       self-cal  status=correctable  weight=1
system "rm /tmp/ff.ff"
mapsize field_size, field_cell
! Map grid = 1024x1024 pixels with 0.400x0.400 milli-arcsec cellsize.
startmod
! Applying default point source starting model.
! Performing phase self-cal
! Adding 1 model components to the UV plane model.
! The established model now contains 1 components and 1 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=6.445334Jy  sigma=412.612201
! Fit after  self-cal, rms=5.424943Jy  sigma=349.413851
! clrmod: Cleared the established, tentative and continuum models.
! Redundant starting model cleared.
print "=== Flag out IVS stations"
! === Flag out IVS stations 
integer lun
string  cfg_file
lun = outfile ( "/tmp/ff.ff" ) 
do i=1,nsub
  do j=1,ntel(i)
    fprintf lun, "%s\n", telname(j,i)
    end do
  end do
close ( lun )
system "/home/lpetrov/bin/dimap_flag_process.csh /tmp/ff.ff"
![@/tmp/ff.ff \]
![Exited script file: /tmp/ff.ff]
uvw 2,-1
! Uniform weighting binwidth: 2 (pixels).
! Gridding weights will be scaled by errors raised to the power -1.
! Radial weighting is not currently selected.
flux_cutoff = imstat(rms) * dynam
! Inverting map and beam 
! Estimated beam: bmin=2.75 mas, bmaj=9.46 mas, bpa=-3.63 degrees
! Estimated noise=0.727929 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! Added new window around map position (0, 0).
! clean: niter=100  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 4.67463 Jy
! Component: 100  -  total flux cleaned = 5.83408 Jy
! Total flux subtracted in 100 components = 5.83408 Jy
! Clean residual min=-0.236391 max=0.470939 Jy/beam
! Clean residual mean=-0.002844 rms=0.066492 Jy/beam
! Combined flux in latest and established models = 5.83408 Jy
! Performing phase self-cal
! Adding 18 model components to the UV plane model.
! The established model now contains 18 components and 5.83408 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=1.245790Jy  sigma=82.980378
! Fit after  self-cal, rms=1.245857Jy  sigma=82.978345
! Inverting map 
! clean: niter=100  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.520083 Jy
! Component: 100  -  total flux cleaned = 0.792661 Jy
! Total flux subtracted in 100 components = 0.792661 Jy
! Clean residual min=-0.132317 max=0.135418 Jy/beam
! Clean residual mean=-0.001182 rms=0.033071 Jy/beam
! Combined flux in latest and established models = 6.62674 Jy
! Performing phase self-cal
! Adding 20 model components to the UV plane model.
! The established model now contains 33 components and 6.62674 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.904037Jy  sigma=59.401528
! Fit after  self-cal, rms=0.903964Jy  sigma=59.398620
! Inverting map 
print "=== Finished uniform weighting clean ==="
! === Finished uniform weighting clean === 
uvw 0,-1
! Uniform weighting is not currently selected.
! Gridding weights will be scaled by errors raised to the power -1.
! Radial weighting is not currently selected.
win_mult = win_mult * 1.6
clean_niter = clean_niter * 2
dynam = dynam - 0.5
flux_cutoff = imstat(rms) * dynam
! Inverting map and beam 
! Estimated beam: bmin=3.692 mas, bmaj=12.45 mas, bpa=-2.674 degrees
! Estimated noise=0.51233 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.246031 Jy
! Component: 100  -  total flux cleaned = 0.343725 Jy
! Component: 150  -  total flux cleaned = 0.38399 Jy
! Component: 200  -  total flux cleaned = 0.395097 Jy
! Total flux subtracted in 200 components = 0.395097 Jy
! Clean residual min=-0.114947 max=0.124259 Jy/beam
! Clean residual mean=-0.001555 rms=0.035041 Jy/beam
! Combined flux in latest and established models = 7.02183 Jy
! Performing phase self-cal
! Adding 53 model components to the UV plane model.
! The established model now contains 75 components and 7.02183 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.850106Jy  sigma=55.847239
! Fit after  self-cal, rms=0.850047Jy  sigma=55.846347
! Inverting map 
print "=== Finished natural weighting clean for VLBI sites ==="
! === Finished natural weighting clean for VLBI sites === 
gscale true
! Performing overall amplitude self-cal
! 
! Correcting IF 1.
!  Telescope amplitude corrections in sub-array 1:
!   FD        0.98     KP        1.02     LA        1.17     OV        1.01     
!   PT        1.06     SC        0.95     
! 
!  Telescope amplitude corrections in sub-array 2:
!   FD        0.97     KP        1.02     LA        1.18     MK        0.93     
!   OV        1.00     PT        1.05     SC        0.97     
! 
!  Telescope amplitude corrections in sub-array 3:
!   FD        0.98     KP        1.01     LA        1.18     MK        0.95     
!   OV        1.01     PT        1.05     
! 
! 
! Correcting IF 2.
!  Telescope amplitude corrections in sub-array 1:
!   FD        1.05     KP        1.03     LA        1.05     OV        1.05     
!   PT        1.06     SC        1.03     
! 
!  Telescope amplitude corrections in sub-array 2:
!   FD        1.04     KP        1.03     LA        1.06     MK        0.99     
!   OV        1.04     PT        1.04     SC        1.06     
! 
!  Telescope amplitude corrections in sub-array 3:
!   FD        1.05     KP        1.03     LA        1.06     MK        1.00     
!   OV        1.05     PT        1.05     
! 
! 
! Correcting IF 3.
!  Telescope amplitude corrections in sub-array 1:
!   FD        1.07     KP        0.91     LA        0.98     OV        1.06     
!   PT        1.08     SC        0.96     
! 
!  Telescope amplitude corrections in sub-array 2:
!   FD        1.07     KP        0.91     LA        0.98     MK        0.99     
!   OV        1.05     PT        1.07     SC        0.98     
! 
!  Telescope amplitude corrections in sub-array 3:
!   FD        1.07     KP        0.90     LA        1.00     MK        0.99     
!   OV        1.06     PT        1.08     
! 
! 
! Correcting IF 4.
!  Telescope amplitude corrections in sub-array 1:
!   FD        1.08     KP        0.84     LA        0.83     OV        0.89     
!   PT        0.96     SC        1.01     
! 
!  Telescope amplitude corrections in sub-array 2:
!   FD        1.08     KP        0.84     LA        0.82     MK        1.11     
!   OV        0.89     PT        0.94     SC        1.03     
! 
!  Telescope amplitude corrections in sub-array 3:
!   FD        1.08     KP        0.84     LA        0.84     MK        1.12     
!   OV        0.90     PT        0.95     
! 
! 
! Fit before self-cal, rms=0.850047Jy  sigma=55.846347
! Fit after  self-cal, rms=0.116871Jy  sigma=5.758872
dynam = dynam - 0.5
flux_cutoff = imstat(rms) * dynam
! Inverting map and beam 
! Estimated beam: bmin=3.7 mas, bmaj=12.46 mas, bpa=-2.583 degrees
! Estimated noise=0.513199 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.000350348 Jy
! Component: 100  -  total flux cleaned = 0.000573123 Jy
! Component: 150  -  total flux cleaned = 0.000573391 Jy
! Component: 200  -  total flux cleaned = 0.000568706 Jy
! Total flux subtracted in 200 components = 0.000568706 Jy
! Clean residual min=-0.015492 max=0.018867 Jy/beam
! Clean residual mean=-0.000331 rms=0.004026 Jy/beam
! Combined flux in latest and established models = 7.0224 Jy
! Performing phase self-cal
! Adding 15 model components to the UV plane model.
! The established model now contains 87 components and 7.0224 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.115144Jy  sigma=5.729179
! Fit after  self-cal, rms=0.115128Jy  sigma=5.727330
! Inverting map 
selfcal true, true, soltime1
! Performing amp+phase self-cal over 800000 minute time intervals
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.115128Jy  sigma=5.727330
! Fit after  self-cal, rms=0.114941Jy  sigma=5.726278
dynam = dynam - 0.75
clean clean_niter,clean_gain
! Inverting map and beam 
! Estimated beam: bmin=3.7 mas, bmaj=12.47 mas, bpa=-2.587 degrees
! Estimated noise=0.513234 mJy/beam.
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.000530992 Jy
! Component: 100  -  total flux cleaned = 0.000530096 Jy
! Component: 150  -  total flux cleaned = 0.000527865 Jy
! Component: 200  -  total flux cleaned = 0.000500509 Jy
! Total flux subtracted in 200 components = 0.000500509 Jy
! Clean residual min=-0.015487 max=0.018546 Jy/beam
! Clean residual mean=-0.000333 rms=0.003988 Jy/beam
! Combined flux in latest and established models = 7.0229 Jy
selfcal
! Performing phase self-cal
! Adding 12 model components to the UV plane model.
! The established model now contains 88 components and 7.0229 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.113379Jy  sigma=5.699972
! Fit after  self-cal, rms=0.113346Jy  sigma=5.699213
flux_cutoff = imstat(rms) * dynam
! Inverting map 
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! Added new window around map position (11.6, -5.6).
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.00565684 Jy
! Component: 100  -  total flux cleaned = 0.00628622 Jy
! Component: 150  -  total flux cleaned = 0.0063205 Jy
! Component: 200  -  total flux cleaned = 0.0047754 Jy
! Total flux subtracted in 200 components = 0.0047754 Jy
! Clean residual min=-0.011475 max=0.014711 Jy/beam
! Clean residual mean=-0.000321 rms=0.003595 Jy/beam
! Combined flux in latest and established models = 7.02768 Jy
! Performing phase self-cal
! Adding 13 model components to the UV plane model.
! The established model now contains 101 components and 7.02768 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.105532Jy  sigma=5.453105
! Fit after  self-cal, rms=0.104826Jy  sigma=5.432751
! Inverting map 
selfcal true, true, soltime2
! Performing amp+phase self-cal over 15 minute time intervals
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.104826Jy  sigma=5.432751
! Fit after  self-cal, rms=0.098272Jy  sigma=4.761466
clean clean_niter,clean_gain
! Inverting map and beam 
! Estimated beam: bmin=3.701 mas, bmaj=12.47 mas, bpa=-2.608 degrees
! Estimated noise=0.5133 mJy/beam.
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.00423168 Jy
! Component: 100  -  total flux cleaned = 0.00385304 Jy
! Component: 150  -  total flux cleaned = 0.00323241 Jy
! Component: 200  -  total flux cleaned = 0.00322675 Jy
! Total flux subtracted in 200 components = 0.00322675 Jy
! Clean residual min=-0.009884 max=0.010379 Jy/beam
! Clean residual mean=0.000071 rms=0.002766 Jy/beam
! Combined flux in latest and established models = 7.03091 Jy
selfcal
! Performing phase self-cal
! Adding 14 model components to the UV plane model.
! The established model now contains 110 components and 7.03091 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.094201Jy  sigma=4.647439
! Fit after  self-cal, rms=0.093869Jy  sigma=4.638224
flux_cutoff = imstat(rms) * dynam
! Inverting map 
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.000744477 Jy
! Component: 100  -  total flux cleaned = 0.000736038 Jy
! Component: 150  -  total flux cleaned = 0.000955146 Jy
! Component: 200  -  total flux cleaned = 0.0009497 Jy
! Total flux subtracted in 200 components = 0.0009497 Jy
! Clean residual min=-0.009907 max=0.010315 Jy/beam
! Clean residual mean=0.000073 rms=0.002695 Jy/beam
! Combined flux in latest and established models = 7.03186 Jy
! Performing phase self-cal
! Adding 22 model components to the UV plane model.
! The established model now contains 125 components and 7.03186 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.091840Jy  sigma=4.596917
! Fit after  self-cal, rms=0.091719Jy  sigma=4.594557
! Inverting map 
uvtaper 0.3,taper_size
! Gaussian taper: value 0.3 at UV radius = 20 mega-wavelengths.
win_mult = win_mult * 1.2
selfcal true, true, soltime2
! Performing amp+phase self-cal over 15 minute time intervals
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.091719Jy  sigma=4.594557
! Fit after  self-cal, rms=0.091399Jy  sigma=4.579261
clean clean_niter,clean_gain
! Inverting map and beam 
! Estimated beam: bmin=11.52 mas, bmaj=44.02 mas, bpa=2.5 degrees
! Estimated noise=0.566213 mJy/beam.
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.000586514 Jy
! Component: 100  -  total flux cleaned = 0.000696903 Jy
! Component: 150  -  total flux cleaned = 0.000696876 Jy
! Component: 200  -  total flux cleaned = 0.000656468 Jy
! Total flux subtracted in 200 components = 0.000656468 Jy
! Clean residual min=-0.008386 max=0.007677 Jy/beam
! Clean residual mean=0.000122 rms=0.002699 Jy/beam
! Combined flux in latest and established models = 7.03251 Jy
selfcal
! Performing phase self-cal
! Adding 12 model components to the UV plane model.
! The established model now contains 136 components and 7.03251 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.091356Jy  sigma=4.575427
! Fit after  self-cal, rms=0.091334Jy  sigma=4.574888
flux_cutoff = imstat(rms) * dynam
! Inverting map 
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.03  cutoff=0
! Component: 050  -  total flux cleaned = 0.000150349 Jy
! Component: 100  -  total flux cleaned = 7.62613e-05 Jy
! Component: 150  -  total flux cleaned = 4.24307e-05 Jy
! Component: 200  -  total flux cleaned = -2.05262e-05 Jy
! Total flux subtracted in 200 components = -2.05262e-05 Jy
! Clean residual min=-0.008415 max=0.007652 Jy/beam
! Clean residual mean=0.000120 rms=0.002697 Jy/beam
! Combined flux in latest and established models = 7.03249 Jy
! Performing phase self-cal
! Adding 10 model components to the UV plane model.
! The established model now contains 141 components and 7.03249 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.091320Jy  sigma=4.572973
! Fit after  self-cal, rms=0.091310Jy  sigma=4.572593
! Inverting map 
uvtaper 0,0
! No UV-taper is currently set.
win_mult = win_mult / 1.2
print "=== Finished amplitude self-cal for VLBA stations ==="
! === Finished amplitude self-cal for VLBA stations === 
unflag *
! Unflagging all baselines in the currently selected channels.
uncalib false, false, true
! uncal: All telescope correction flags have been un-done.
integer lun
lun = outfile ( "/tmp/ff.ff" )
do i=1,nsub
  do j=1,ntel(i)
    fprintf lun, "%s\n", telname(j,i)
    end do
  end do
close ( lun )
system "/home/lpetrov/bin/dimap_selfant_process.csh /tmp/ff.ff"
![@/tmp/ff.ff]
1:FD
! Syntax error in line:
! 1:FD
! ^
! Found constant: 1.000 
! Where a command or assignment expression was expected.
![Exited script file: /tmp/ff.ff]
![Exited script file: /home/lpetrov/bin/rdv_muppet]
! 
wmap "/scr/pima/rdv96_uvs/J0538-4405_S\_map.fits"
! Inverting map and beam 
! Estimated beam: bmin=3.702 mas, bmaj=12.47 mas, bpa=-2.614 degrees
! Estimated noise=0.513372 mJy/beam.
! restore: Substituting estimate of restoring beam from last 'invert'.
! Restoring with beam: 3.702 x 12.47 at -2.614 degrees (North through East)
! Clean map  min=-0.011606  max=6.2503 Jy/beam
! Writing clean map to FITS file: /scr/pima/rdv96_uvs/J0538-4405_S_map.fits
float peak_flux
peak_flux = peak(flux,max)
invert
! Inverting map 
float image_peak
image_peak = int(10000*peak_flux)/10000
float image_rms
image_rms  = int(100000*imstat(rms))/100000
print "========================================="
! ========================================= 
print "The image peak= ", image_peak, " rms= ", image_rms, " Jy"
! The image peak=  6.2503  rms=  0.00263  Jy 
quit
! Quitting program
! Log file /scr/pima/rdv96_uvs/J0538-4405_S_uvs.log closed on Sat Dec 21 00:22:39 2013