! Started logfile: J0038+8447_S_2006_02_16_yyk_uvs.log on Wed Jul  5 11:00:01 2006
obs J0038+8447_S_2006_02_16_yyk_uva.fits
! Reading UV FITS file: J0038+8447_S_2006_02_16_yyk_uva.fits
! AN table 1: 880 integrations on 45 of 45 possible baselines.
! Apparent sampling: 0.331919 visibilities/baseline/integration-bin.
! *** This seems a bit low - see "help observe" on the binwid argument.
! Found source: J0038+8447
! 
! There are 4 IFs, and a total of 4 channels:
! 
!  IF  Channel    Frequency  Freq offset  Number of   Overall IF
!       origin    at origin  per channel   channels    bandwidth
!  ------------------------------------------------------------- (Hz)
!  01        1  2.23697e+09        8e+06          1        8e+06
!  02        2  2.26697e+09        8e+06          1        8e+06
!  03        3  2.35697e+09        8e+06          1        8e+06
!  04        4  2.37697e+09        8e+06          1        8e+06
! 
! Polarization(s): RR
! 
! Read 2421 lines of history.
! 
! Reading 52576 visibilities.
select I
! Polarization I is unavailable.
! Selecting polarization: RR,  channels: 1..4
! Reading IF 1 channels: 1..1
! Reading IF 2 channels: 2..2
! Reading IF 3 channels: 3..3
! Reading IF 4 channels: 4..4
![@muppet J0038+8447_S_2006_02_16_yyk]
integer clean_niter
clean_niter = 100
float clean_gain
clean_gain = 0.04
float dynam
dynam = 6.0
float amp_soltime1
amp_soltime1 = 10
float amp_soltime2
amp_soltime2 = 1
float phase_soltime1
phase_soltime1=10
float phase_soltime2
phase_soltime2=0.5
float phase_soltime
phase_soltime=phase_soltime1
float ampcor_selflim
ampcor_selflim=1.20
float thresh
thresh = 0.10
float win_mult
win_mult = 1.8
float time_av
time_av = 30
float old_peak
float new_peak
float flux_cutoff
mapsize field_size, field_cell
! Map grid = 512x512 pixels with 0.500x0.500 milli-arcsec cellsize.
uvav time_av, true
! Averaging into 30 second bins.
! Selecting polarization: RR,  channels: 1..4
! Reading IF 1 channels: 1..1
! Reading IF 2 channels: 2..2
! Reading IF 3 channels: 3..3
! Reading IF 4 channels: 4..4
phase_soltime=phase_soltime1
print "uvstat(rms)=",uvstat(rms),"Jy"
! uvstat(rms)= 0.123652 Jy 
uvw 2,-1
! Uniform weighting binwidth: 2 (pixels).
! Gridding weights will be scaled by errors raised to the power -1.
! Radial weighting is not currently selected.
flux_cutoff = imstat(rms) * dynam
! Inverting map and beam 
! Estimated beam: bmin=8.624 mas, bmaj=22.48 mas, bpa=50.16 degrees
! Estimated noise=1.90851 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal false,false,phase_soltime
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=100  gain=0.04  cutoff=0
! Component: 050  -  total flux cleaned = 0.0859356 Jy
! Component: 100  -  total flux cleaned = 0.114579 Jy
! Total flux subtracted in 100 components = 0.114579 Jy
! Clean residual min=-0.011834 max=0.012074 Jy/beam
! Clean residual mean=0.001222 rms=0.006617 Jy/beam
! Combined flux in latest and established models = 0.114579 Jy
! Performing phase self-cal over 10 minute time intervals
! Adding 44 model components to the UV plane model.
! The established model now contains 44 components and 0.114579 Jy
! 
! Correcting IF 1.
!  A total of 64 telescope corrections were flagged in sub-array 1.
! 
! Correcting IF 2.
!  A total of 64 telescope corrections were flagged in sub-array 1.
! 
! Correcting IF 3.
!  A total of 64 telescope corrections were flagged in sub-array 1.
! 
! Correcting IF 4.
!  A total of 64 telescope corrections were flagged in sub-array 1.
! 
! Fit before self-cal, rms=0.065321Jy  sigma=1.222959
! Fit after  self-cal, rms=0.064938Jy  sigma=1.215419
! Inverting map and beam 
! Estimated beam: bmin=8.624 mas, bmaj=22.48 mas, bpa=50.16 degrees
! Estimated noise=1.90851 mJy/beam.
print "************** FINISHED UNIFORM WEIGHTING CLEAN **************"
! ************** FINISHED UNIFORM WEIGHTING CLEAN ************** 
! 
uvw 0,-2
! Uniform weighting is not currently selected.
! Gridding weights will be scaled by errors raised to the power -2.
! Radial weighting is not currently selected.
win_mult = win_mult * 1.6
clean_niter = clean_niter * 2
dynam = dynam - 0.5
flux_cutoff = imstat(rms) * dynam
! Inverting map and beam 
! Estimated beam: bmin=8.831 mas, bmaj=23.83 mas, bpa=47.62 degrees
! Estimated noise=1.09264 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal false,false,phase_soltime
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.04  cutoff=0
! Component: 050  -  total flux cleaned = 0.00870753 Jy
! Component: 100  -  total flux cleaned = 0.00926404 Jy
! Component: 150  -  total flux cleaned = 0.0084072 Jy
! Component: 200  -  total flux cleaned = 0.00726431 Jy
! Total flux subtracted in 200 components = 0.00726431 Jy
! Clean residual min=-0.004509 max=0.004528 Jy/beam
! Clean residual mean=0.000445 rms=0.002738 Jy/beam
! Combined flux in latest and established models = 0.121843 Jy
! Performing phase self-cal over 10 minute time intervals
! Adding 121 model components to the UV plane model.
! The established model now contains 164 components and 0.121843 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.057563Jy  sigma=1.069565
! Fit after  self-cal, rms=0.057493Jy  sigma=1.068390
! Inverting map 
print "************** FINISHED NATURAL WEIGHTING CLEAN **************"
! ************** FINISHED NATURAL WEIGHTING CLEAN ************** 
! 
restore
! restore: Substituting estimate of restoring beam from last 'invert'.
! Restoring with beam: 8.831 x 23.83 at 47.62 degrees (North through East)
! Clean map  min=-0.01187  max=0.093686 Jy/beam
if(peak(flux) < thresh*2)
  selflims ampcor_selflim
  end if
! Selfcal amplitude corrections will be limited to 0.833333 -> 1.2.
! Selfcal phase corrections will not be limited.
gscale
! Performing overall amplitude self-cal
! 
! Correcting IF 1.
!  Amplitude normalization factor in sub-array 1: 1.01383
!  Telescope amplitude corrections in sub-array 1:
!   BR        0.93     FD        0.95     HN        1.00*    KP        1.07     
!   LA        0.94     MK        1.00*    NL        1.00*    OV        1.05     
!   PT        0.92     SC        1.00*    
! 
! 
! Correcting IF 2.
!  Amplitude normalization factor in sub-array 1: 1.01993
!  Telescope amplitude corrections in sub-array 1:
!   BR        0.95     FD        1.02     HN        1.00*    KP        1.04     
!   LA        0.99     MK        1.00*    NL        1.00*    OV        0.89     
!   PT        0.91     SC        1.00*    
! 
! 
! Correcting IF 3.
!  Amplitude normalization factor in sub-array 1: 1
!  Telescope amplitude corrections in sub-array 1:
!   BR        1.00*    FD        1.00*    HN        1.00*    KP        1.00*    
!   LA        1.00*    MK        1.00*    NL        1.00*    OV        1.00*    
!   PT        1.00*    SC        1.00*    
! 
! 
! Correcting IF 4.
!  Amplitude normalization factor in sub-array 1: 1
!  Telescope amplitude corrections in sub-array 1:
!   BR        1.00*    FD        1.00*    HN        1.00*    KP        1.00*    
!   LA        1.00*    MK        1.00*    NL        1.00*    OV        1.00*    
!   PT        1.00*    SC        1.00*    
! 
! 
! Fit before self-cal, rms=0.057493Jy  sigma=1.068390
! Fit after  self-cal, rms=0.056839Jy  sigma=1.057071
selfcal false, false, phase_soltime
! Performing phase self-cal over 10 minute time intervals
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.056839Jy  sigma=1.057071
! Fit after  self-cal, rms=0.056833Jy  sigma=1.056944
dynam = dynam - 0.5
flux_cutoff = imstat(rms) * dynam
! Inverting map and beam 
! Estimated beam: bmin=8.805 mas, bmaj=24.07 mas, bpa=47.58 degrees
! Estimated noise=1.07119 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal false,false,phase_soltime
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.04  cutoff=0
! Component: 050  -  total flux cleaned = -0.000139449 Jy
! Component: 100  -  total flux cleaned = 6.27257e-05 Jy
! Component: 150  -  total flux cleaned = 0.000278912 Jy
! Component: 200  -  total flux cleaned = 0.000449302 Jy
! Total flux subtracted in 200 components = 0.000449302 Jy
! Clean residual min=-0.002085 max=0.002074 Jy/beam
! Clean residual mean=0.000127 rms=0.001190 Jy/beam
! Combined flux in latest and established models = 0.122293 Jy
! Performing phase self-cal over 10 minute time intervals
! Adding 105 model components to the UV plane model.
! The established model now contains 266 components and 0.122293 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.055335Jy  sigma=1.029993
! Fit after  self-cal, rms=0.055308Jy  sigma=1.029642
! Inverting map 
print "************** FINISHED AMPLITUDE GSCALE SELF-CAL **************"
! ************** FINISHED AMPLITUDE GSCALE SELF-CAL ************** 
! 
phase_soltime=phase_soltime2
selfcal false, false, phase_soltime
! Performing phase self-cal over 0.5 minute time intervals
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.055308Jy  sigma=1.029642
! Fit after  self-cal, rms=0.052055Jy  sigma=0.958976
dynam = dynam - 0.5
flux_cutoff = imstat(rms) * dynam
! Inverting map 
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal false,false,phase_soltime
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.04  cutoff=0
! Component: 050  -  total flux cleaned = 0.00184029 Jy
! Component: 100  -  total flux cleaned = 0.00156346 Jy
! Component: 150  -  total flux cleaned = 0.00125293 Jy
! Component: 200  -  total flux cleaned = 0.000606698 Jy
! Total flux subtracted in 200 components = 0.000606698 Jy
! Clean residual min=-0.001100 max=0.001096 Jy/beam
! Clean residual mean=0.000067 rms=0.000645 Jy/beam
! Combined flux in latest and established models = 0.122899 Jy
! Performing phase self-cal over 0.5 minute time intervals
! Adding 125 model components to the UV plane model.
! The established model now contains 387 components and 0.122899 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.051166Jy  sigma=0.948773
! Fit after  self-cal, rms=0.051049Jy  sigma=0.945711
! Inverting map 
print "*** FINISHED NATURAL WEIGHTING CLEAN with shorter phase_soltime ***"
! *** FINISHED NATURAL WEIGHTING CLEAN with shorter phase_soltime *** 
! 
dynam = dynam - 0.25
restore
! restore: Substituting estimate of restoring beam from last 'invert'.
! Restoring with beam: 8.805 x 24.07 at 47.58 degrees (North through East)
! Clean map  min=-0.010541  max=0.094182 Jy/beam
if(peak(flux) > thresh)
  selfcal true, true, amp_soltime1
  selfcal false, false, phase_soltime
  flux_cutoff = imstat(rms) * dynam
  repeat
    if (peak(flux) > flux_cutoff) peakwin win_mult
    clean clean_niter,clean_gain
    flux_cutoff = imstat(rms) * dynam
    selfcal false,false,phase_soltime
    new_peak = peak(flux)
    until(new_peak<=flux_cutoff)
  selfcal true, true, amp_soltime2
  selfcal false, false, phase_soltime
  flux_cutoff = imstat(rms) * dynam
  repeat
    if (peak(flux) > flux_cutoff) peakwin win_mult
    clean clean_niter,clean_gain
    flux_cutoff = imstat(rms) * dynam
    selfcal false,false,phase_soltime
    new_peak = peak(flux)
    until(new_peak<=flux_cutoff)
  print "************** FINISHED AMPLITUDE SELF-CAL **************"
  end if
uvtaper 0.3,taper_size
! Gaussian taper: value 0.3 at UV radius = 20 mega-wavelengths.
win_mult = win_mult * 1.4
flux_cutoff = imstat(rms) * dynam
! Inverting map and beam 
! Estimated beam: bmin=9.66 mas, bmaj=23.89 mas, bpa=46.55 degrees
! Estimated noise=1.08815 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  selfcal false,false,phase_soltime
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.04  cutoff=0
! Component: 050  -  total flux cleaned = -0.000368417 Jy
! Component: 100  -  total flux cleaned = -0.000529607 Jy
! Component: 150  -  total flux cleaned = -0.000669538 Jy
! Component: 200  -  total flux cleaned = -0.000672481 Jy
! Total flux subtracted in 200 components = -0.000672481 Jy
! Clean residual min=-0.000769 max=0.000770 Jy/beam
! Clean residual mean=-0.000000 rms=0.000417 Jy/beam
! Combined flux in latest and established models = 0.122227 Jy
! Performing phase self-cal over 0.5 minute time intervals
! Adding 93 model components to the UV plane model.
! The established model now contains 462 components and 0.122227 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.050748Jy  sigma=0.942581
! Fit after  self-cal, rms=0.050737Jy  sigma=0.942313
! Inverting map 
uvtaper 0
! No UV-taper is currently set.
win_mult = win_mult / 1.4
print "************** FINISHED TAPERING SELF-CAL CLEAN **************"
! ************** FINISHED TAPERING SELF-CAL CLEAN ************** 
! 
print "************** CLEARING MODEL AND STARTING OVER **********"
! ************** CLEARING MODEL AND STARTING OVER ********** 
clrmod true,true,true
! clrmod: Cleared the established, tentative and continuum models.
uvw 2,-1
! Uniform weighting binwidth: 2 (pixels).
! Gridding weights will be scaled by errors raised to the power -1.
! Radial weighting is not currently selected.
clean clean_niter, clean_gain
! Inverting map and beam 
! Estimated beam: bmin=8.621 mas, bmaj=22.66 mas, bpa=50.08 degrees
! Estimated noise=1.86963 mJy/beam.
! clean: niter=200  gain=0.04  cutoff=0
! Component: 050  -  total flux cleaned = 0.0860964 Jy
! Component: 100  -  total flux cleaned = 0.113846 Jy
! Component: 150  -  total flux cleaned = 0.125613 Jy
! Component: 200  -  total flux cleaned = 0.125703 Jy
! Total flux subtracted in 200 components = 0.125703 Jy
! Clean residual min=-0.006252 max=0.006154 Jy/beam
! Clean residual mean=0.000651 rms=0.003629 Jy/beam
! Combined flux in latest and established models = 0.125703 Jy
uvw 0,-2
! Uniform weighting is not currently selected.
! Gridding weights will be scaled by errors raised to the power -2.
! Radial weighting is not currently selected.
flux_cutoff = imstat(rms) * dynam
! Adding 85 model components to the UV plane model.
! The established model now contains 85 components and 0.125703 Jy
! Inverting map and beam 
! Estimated beam: bmin=8.805 mas, bmaj=24.07 mas, bpa=47.58 degrees
! Estimated noise=1.07119 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  keep
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.04  cutoff=0
! Component: 050  -  total flux cleaned = -0.00163147 Jy
! Component: 100  -  total flux cleaned = -0.00346955 Jy
! Component: 150  -  total flux cleaned = -0.00523987 Jy
! Component: 200  -  total flux cleaned = -0.00521862 Jy
! Total flux subtracted in 200 components = -0.00521862 Jy
! Clean residual min=-0.002880 max=0.002932 Jy/beam
! Clean residual mean=0.000245 rms=0.001675 Jy/beam
! Combined flux in latest and established models = 0.120484 Jy
! Adding 120 model components to the UV plane model.
! The established model now contains 205 components and 0.120484 Jy
! Inverting map 
uvtaper 0.3,taper_size
! Gaussian taper: value 0.3 at UV radius = 20 mega-wavelengths.
flux_cutoff = imstat(rms) * dynam
! Inverting map and beam 
! Estimated beam: bmin=9.66 mas, bmaj=23.89 mas, bpa=46.55 degrees
! Estimated noise=1.08815 mJy/beam.
repeat
  if (peak(flux) > flux_cutoff) peakwin win_mult
  clean clean_niter,clean_gain
  flux_cutoff = imstat(rms) * dynam
  keep
  new_peak = peak(flux)
  until(new_peak<=flux_cutoff)
! clean: niter=200  gain=0.04  cutoff=0
! Component: 050  -  total flux cleaned = -0.000175457 Jy
! Component: 100  -  total flux cleaned = -0.000352529 Jy
! Component: 150  -  total flux cleaned = -0.00113262 Jy
! Component: 200  -  total flux cleaned = -0.00205611 Jy
! Total flux subtracted in 200 components = -0.00205611 Jy
! Clean residual min=-0.001552 max=0.001555 Jy/beam
! Clean residual mean=0.000122 rms=0.000947 Jy/beam
! Combined flux in latest and established models = 0.118428 Jy
! Adding 115 model components to the UV plane model.
! The established model now contains 313 components and 0.118428 Jy
! Inverting map 
uvtaper 0
! No UV-taper is currently set.
clean
! Inverting map and beam 
! Estimated beam: bmin=8.805 mas, bmaj=24.07 mas, bpa=47.58 degrees
! Estimated noise=1.07119 mJy/beam.
! clean: niter=200  gain=0.04  cutoff=0
! Component: 050  -  total flux cleaned = 0.00057699 Jy
! Component: 100  -  total flux cleaned = 0.000222726 Jy
! Component: 150  -  total flux cleaned = -9.06783e-05 Jy
! Component: 200  -  total flux cleaned = -0.000442488 Jy
! Total flux subtracted in 200 components = -0.000442488 Jy
! Clean residual min=-0.000849 max=0.000862 Jy/beam
! Clean residual mean=0.000016 rms=0.000466 Jy/beam
! Combined flux in latest and established models = 0.117985 Jy
selfcal false, false, phase_soltime
! Performing phase self-cal over 0.5 minute time intervals
! Adding 102 model components to the UV plane model.
! The established model now contains 409 components and 0.117985 Jy
! 
! Correcting IF 1.
! 
! Correcting IF 2.
! 
! Correcting IF 3.
! 
! Correcting IF 4.
! 
! Fit before self-cal, rms=0.050806Jy  sigma=0.943081
! Fit after  self-cal, rms=0.050792Jy  sigma=0.942930
wmodel J0038+8447_S_2006_02_16_yyk\_map.mod
! Writing 409 model components to file: J0038+8447_S_2006_02_16_yyk_map.mod
wobs J0038+8447_S_2006_02_16_yyk\_uvs.fits
! Writing UV FITS file: J0038+8447_S_2006_02_16_yyk_uvs.fits
wwins J0038+8447_S_2006_02_16_yyk\_map.win
! wwins: No CLEAN windows to write.
! Error occured in command: wwins
![Exited script file: muppet]
! 
wmap "J0038+8447_S_2006_02_16_yyk\_map.fits"
! Inverting map 
! restore: Substituting estimate of restoring beam from last 'invert'.
! Restoring with beam: 8.805 x 24.07 at 47.58 degrees (North through East)
! Clean map  min=-0.011112  max=0.093981 Jy/beam
! Writing clean map to FITS file: J0038+8447_S_2006_02_16_yyk_map.fits
float peak_flux
peak_flux = peak(flux,max)
print "The peak flux is",peak_flux
! The peak flux is 0.0939811 
invert
! Inverting map 
float image_rms
image_rms = imstat(rms)
print "The final image rms is",image_rms
! The final image rms is 0.000454778 
device "J0038+8447_S_2006_02_16_yyk\_map.eps/VPS"
! Attempting to open device: 'J0038+8447_S_2006_02_16_yyk_map.eps/VPS'
loglevs 100*3*image_rms/peak_flux
! The new contour levels are:
!  -1.45171 1.45171 2.90342 5.80684 11.6137 23.2274 46.4547 92.9094
print "clev=",int(3*image_rms*10000)/10000
! clev= 0.0013 
print "peak=",int(peak_flux*1000)/1000
! peak= 0.093 
mapcolor none
! Mapplot colormap: none, contrast: 1 brightness: 0.5.
mapplot cln
! restore: Substituting estimate of restoring beam from last 'invert'.
! Restoring with beam: 8.805 x 24.07 at 47.58 degrees (North through East)
! Clean map  min=-0.011112  max=0.093981 Jy/beam
mapcolor color, 0.9
! Mapplot colormap: rainbow, contrast: 0.9 brightness: 0.5.
device "J0038+8447_S_2006_02_16_yyk\_map.gif/gif"
! Attempting to open device: 'J0038+8447_S_2006_02_16_yyk_map.gif/gif'
mapplot cln
quit
! Quitting program
! Log file J0038+8447_S_2006_02_16_yyk_uvs.log closed on Wed Jul  5 11:00:27 2006